Package Anipose #476

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opened 2021-10-04 12:46:20 +00:00 by ankursinha · 1 comment

ankursinha commented

2021-10-04 12:46:20 +00:00

Owner

Please use this ticket to add new software to the NeuroFedora packaging queue.

New software: Anipose

Short description: A toolkit for robust markerless 3D pose estimation

Upstream URL: https://anipose.readthedocs.io/en/latest/index.html

License: BSD

Domain: Neuroimaging/Data analysis/Utilities

Additional information

Is Python, but we'll have to check if all it's compulsory requirements are FOSS and appropriate for Fedora.

Paper in Cell here: https://www.cell.com/cell-reports/fulltext/S2211-1247(21)01179-7?rss=yes

Please use this ticket to add new software to the NeuroFedora packaging queue. #### New software: Anipose Short description: A toolkit for robust markerless 3D pose estimation Upstream URL: https://anipose.readthedocs.io/en/latest/index.html License: BSD Domain: Neuroimaging/Data analysis/Utilities ##### Additional information Is Python, but we'll have to check if all it's compulsory requirements are FOSS and appropriate for Fedora. Paper in Cell here: https://www.cell.com/cell-reports/fulltext/S2211-1247(21)01179-7?rss=yes

music commented

2021-10-10 21:19:44 +00:00

Owner

At a glance, this has some problematic dependencies.

DeepLabCut requires tensorflow and some related packages—plus MoviePy, which in turn requires imageio_ffmpeg and thereby ffmpeg. None of those dependencies are optional.
scikit-video requires either ffmpeg or libav

I don’t think this is going to be possible to package in Fedora.

At a [glance](https://github.com/lambdaloop/anipose/blob/master/setup.py), this has some problematic dependencies. - [DeepLabCut](https://github.com/DeepLabCut/DeepLabCut) requires tensorflow and some related packages—plus [MoviePy](https://github.com/Zulko/moviepy/), which in turn requires [imageio_ffmpeg](https://github.com/imageio/imageio-ffmpeg) and thereby ffmpeg. None of those dependencies are optional. - [scikit-video](https://github.com/scikit-video/scikit-video) requires either ffmpeg or libav I don’t think this is going to be possible to package in Fedora.